2018

F. Fang, J. Huang, G. Huber, J. A. McCammon, B. Zhang. Hierarchical Orthogonal Matrix Generation and Matrix-Vector Multiplications in Rigid Body Simulations SIAM J. Sci. Comp. 40 (2018), A1345-A1361
W. Guan, X. Cheng, J. Huang, G. Huber, W. Li, J. A. McCammon, B. Zhang. RPYFMM: Parallel Adaptive Fast Multipole Method for Rotne-Prager-Yamakawa Tensor in Biomolecular Hydrodynamics Simulations Comput. Phys. Commun. 227 (2018), 99-108
J. DeBuhr, B. Zhang, T. Sterling. Revision of DASHMM: Dynamic Adaptive System for Hierarchical Multipole Methods Comun. Comput. Phys. 23 (2018), 296-314

J. DeBuhr, B. Zhang, L. D’Alessandro. Scalable Hierarchical Multipole Methods using an Asynchronous Many-Tasking Runtime System In Proceedings of Parallel and Distributed Processing Symposium Workshops, 1226-1234, 2017

J. DeBuhr, B. Zhang, A. Tsueda, V. Tilstra-Smith, and T. Sterling. DASHMM: Dynamic Adaptive System for Hierarchical Multipole Methods. Commun. Comput. Phys. 20 (2016), 1106-1126.
B. Zhang, J. Huang, N. P. Pitsianis, and X. Sun. recFMM: Recursive Parallelization of the Adaptive Fast Multipole Method for Coulomb and Screened Coulomb Interactions. Commun. Comput. Phys. 20 (2016), 534-550.
Y. Gu, W. Chen, and B. Zhang. Stress Analysis for Two-Dimensional Thin Structural Problems using the Meshless Singular Boundary Method. Eng. Anal. Bound. Elem. 59 (2016), 1-7.

B. Zhang, B. Peng, J. Huang, N. P. Pitsianis, X. Sun, and B. Lu. Parallel AFMPB Solver with Automatic Surface Meshing for Calculation of Molecular Solvation Free Energy. Comput. Phys. Commun. 190 (2015), 173-181

Y. Gu, W. Chen, Z.-J. Fu, and B. Zhang. The Singular Boundary Method: Mathematical Background and Application in Orthotropic Elastic Problems. Eng. Anal. Bound. Elem. 44 (2014), 152-160
Y. Gu, W. Chen, B. Zhang, and W. Qu. Two General Algorithms for Nearly Singular Integrals in Two Dimensional Anisotropic Boundary Element Method. Comput. Mech. 53 (2014) 1223-1234
B. Zhang. Asynchronous Task Scheduling of the Fast Multipole Method using Various Runtime Systems. In Forth Workshop on Data-Flow Execution Models for Extreme Scale Computing, Edmonton, Canada, August 2014.
Thomas Sterling, Matthew Anderson, P. Kevin Bohan, Maciej Brodowicz, Abhishek Kulkarni, and Bo Zhang. Towards Exascale Co-design in a Runtime System. In Exascale Applications and Software Conference, Stockholm, Sweden, April 2014.

B. Zhang, B. Lu, X. Cheng, J. Huang, N. P. Pitsianis, X. Sun, and J. A. McCammon. Mathematical and Numerical Aspects of the Adaptive Fast Multipole Poisson-Boltzmann Solver. Commun. Comput. Phys. 13 (2013) 107-128.

B. Zhang, J. Huang, N. P. Pitsianis, and X. Sun. A Fourier-Series-Based Kernel-Independent Fast Multipole Method. J. Comput. Phys. 230 (2011) 5807-5821.
B. Zhang, J. Huang, N. P. Pitsianis, and X. Sun. Dynamic Prioritization for Parallel Traversal of Irregularly Structured Spatio-Temporal Graphs. In Proceedings of the 3rd USENIX Workshop on Hot Topics in Parallelism, Berkeley, CA, May 2011.

B. Zhang, J. Huang, N. P. Pitsianis, and X. Sun. Revision of FMM-Yukawa: An Adaptive Fast Multipole Method for Screened Coulomb Interactions. Comput. Phys. Commun. 181 (2010) 2206-2207

J. Huang, J. Jia, and B. Zhang. FMM-Yukawa: An Adaptive Fast Multipole Method for Screened Coulomb Interactions. Comput. Phys. Commun. 180 (2009) 2331-2338